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Purine Derivatives As Kinase Inhibitors

Abstract: The present invention provides kinase inhibitors of Formula I.

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Patent Information

Application #
Filing Date
30 August 2004
Publication Number
18/2006
Publication Type
INA
Invention Field
CHEMICAL
Status
Email
Parent Application
Patent Number
Legal Status
Grant Date
2009-10-29
Renewal Date

Applicants

ELI LILLY AND COMPANY
LILLY CORPORATE CENTER, CITY OF INDIANAPOLIS, STATE OF INDIANA

Inventors

1. CLAYTON, JOSHUA, RYAN
44 HICKORY RIDGE CIRCLE, CICERO, INDIANA 46034
2. DIEFENBACHER, CLIVE, GIDEON
1129 SUGAR MAPLE DRIVE, GREENWOOD, INDIANA 46143
3. ENGLER, THOMAS, ALBERT
11827 GLEN COVE DRIVE, INDIANAPOLIS, INDIANA 46236
4. FURNESS, KELLY, WAYNE
8610 CAPTAIN DRIVE, AVON, INDIANA 46123
5. HENRY, JAMES, ROBERT
7307 ELM RIDGE DRIVE, INDIANAPOLIS, INDIANA 46236
6. MALHOTRA, SUSHANT
2431 EAST 58TH STREET, INDIANAPOLIS, INDIANA 46220
7. MARQUART, ANGELA, LYNN
1179 EVERTON COURT, GREENWOOD, INDIANA 46143
8. MCLEAN, JOHNATHAN, ALEXANDER
1513 EAST 70TH STREET, INDIANAPOLIS, INDIANA 46220
9. MENDEL, DAVID
11348 WOODS BAY LANE, INDIANAPOLIS, INDIANA 46236
10. BURKHOLDER, TIMOTHY, PAUL
13904 SPRINGMILL PONDS CIRCLE, CARMEL, INDIANA 46032
11. LI, YIHONG
14066 HONEY TREE DRIVE, CARMEL, INDIANA 46032
12. REEL, JON, KEVIN
14701 ALSONG COURT, CARMEL, INDIANA 46032

Claims

2. 3-(9-Fluoro-6-((piperidin-l-yl)carbonyl)-6,7-dihydro-6H-[l ,4]dia/.epino-[6,7,l - hi]indol-l-yl)-4-(imidazo[l,2-a]pyridine-3-yl)-2,5-dioxopyrrole hydrochloride having structure:

3. A pharmaceutical composition comprising a compound of Claim 1 or 2 in combination with a pharmaceutically acceptable carrier, diluent or excipient. The present invention provides kinase inhibitors of Formula I.

Specification

HELD OF THE INVENTION The present invention related to purine derivatives of formula (T) as kinase inhibitors. BACKGROUND OF THE INVENTION Glycogen synthase kinase-3 (GSK-3) is a serine'threonine protein kinase first discovered as one of a number of kinases capable of phosphorylating and inactivating glycogen synthase, the regulatory enzyme of glycogen synthesis in mammals (Embi. et al.. Eur. .1. Biochem.. 107.519-527 (1980)). Existing in two isoforms. GSK-3a and GSK-3B. GSK-3 phosphorylates a wide variety of proteins in vitro. The diversity of these proteins suggests a role for GSK-3 in the control of cellular metabolism, growth, and development. Type I diabetes is characterized by a lack of insulin resulting from the destruction ol" insulin producing cells in the pancreas. Type II diabetes is characterized by defective insulin secretion and action. The binding of insulin to its receptor initiates a cascade of events resulting in the phosphorylation and inhibition of GSK-3. contributing to the insulin-induced stimulation of glycogen and protein synthesis. Inhibitors of GSK-3 have been shown to mimic the actions of insulin (Coghlan. et al.. Chem. Biol.. 7.793-803 (2000)). including the ability to lower b100d glucose levels in \ivo (Norman, Drug News Perspect, 14.242-247 (2001)). These recent discoveries suggest that inhibitors of GSK-3 have a potential role in the treatment of diabetes. Alzheimer's disease is characterized by the micro-lubule-associated protein Tan existing in an abnormally hyperphosphorylated state (Cohen and Frame. Nature Reviews: Molecular Cell Biology. 2,769-776 (October 2001) 1000 ng*hr/rnL. Additionally, those GSK-3 inhibitors exhibiting a low IC50 value, such as below 10 nm, and plasma exposures <1000 ng*hr/mL represent a further preferred embodiment of the present invention. Glycogen Synthesis Assay The glycogen synthesis assay measures the increase in the production of glycogen both in the absence and in the presence of insulin in the cells. This test is done according to standard protocols. (Berger, J. and Hayes, N.S., Anal. Biochem., 261,159-163 (1998)). Briefly, 3T3-L1 adipocytes are plated and differentiated in a 96-well plate at 25,000 cells/well. The plate is serum-starved overnight. The serum-starvation media is removed just prior to assay, and the plate is washed with 100 µl/well Krebs-Ringer-Hepes buffer (KRBH). The KRBH is removed and 50 u.1 of compound (twice the amount of the final concentration) is added to the assay plate. Next, 50 µl of 14C-labeled glucose is added to the assay plate at 0.1 µCi/well. The plate is then incubated at 37°C for 2 hours. The plate is washed with 100 µL/well of PBS, and the cells are lysed with 75 µl/well of 1N NaOH. The plate is heated at 70°C for 20 minutes. An aliquot (50 µl) of the supernatant is transferred from the assay plate to a Millipore FC filter plate containing 120 µl/well of ice-cold ethanol. The plate is allowed to stand for 2 hours at 4°C to facilitate precipitation. The ethanol is removed from the filter plate via a vacuum manifold, and the plate is washed with 100 µL/well of ice-cold 70% ethanol. The plate was allowed to dry overnight, and 75 µl/well of Microscint-20 was added to the filter plate. The plate was then counted on a Packard Topcount. The compound of Example 121 was tested in this assay and increased glycogen synthesis by 3.7-fold at 0.1µM in the absence of insulin, and increased glycogen synthesis by 6.4-fold at 0.lµM in the presence of insulin. Glucose Lowering Assay The glucose lowering assay is an in vivo test that measures the effect of the test compound on b100d glucose and triglycerides relative to insulin. (ELDAR- FINKLEMAN, H., et ah, Expression and Characterization of Glycogen Synthase Kinase-3 Mutants and Their Effect on Glycogen Synthase Activity in Intact Cells, Proc. Nat. Acad. Sci, 93, 10228-10233 (1996)). Briefly, ZDF rats (Charles River, Inc.) at six weeks of age are housed individually with free access to food and water. Rats are dosed with drug once daily by oral gavage, with the compound prepared as a suspension in 1% caboxymethylcellusolve/0.25% Tween 80 (CMC-Tween). Vehicle controls' are dosed with CMC-Tween only. The duration of study varied according to the protocol used, with acute dosing studies lasting one day and dose escalation studies lasting seven days. Body weights and food consumption measurements are also performed once a week for seven-day studies. For measurement of b100d glucose and triglycerides, b100d samples of 600 µl are collected by the tail snip method. (The tail snip for b100d sampling is as follows: 1-2 mm of the tail is snipped with a sharp blade. After collection of b100d, a scab.forms at the site of wound. This scab is removed and the tail is gently massaged for other subsequent bleedings.) Glucose and triglyceride determinations are performed on a Hitachi 912 metabolic analyzer, with a kit utilizing the Trinder method. On termination of study, specific tissues (e.g., heart, pancreas, adipose tissues, and liver) are excised to evaluate the effect of these drugs on their metabolic functions. The compound of Example 121 was tested in this assay and lowered glucose by 56% at a dose of 10 mg/kg. Ex Vivo Brain Assay The ex vivo brain assay assesses the GSK-3P kinase activity of the test compound in brain cortex tissue according to standard protocols (Wang, et al., Anal. Biochem., 220, 397-402 (1994)). The ex vivo GSK-3ß kinase activity of a compound is assayed following oral dosing of 2 to 3 month old PDAPP or CD-I mice. After a 20 mg/kg, 24-hour dose, followed by an additional three-hour dose, brain cortex tissue is dissected and homogenized in freshly prepared lysis buffer (10 mM K2HPO4 pH 7.2,1 mM EDTA, 5 mM EGTA, 10 mM MgCl2, 50 mM ß-Glycerophosphate, 1 mM Na3VO4, 2 mM DTT, 1 uM Microcystis COMPLETE protease inhibitor tablet, no detergent). Following a thirty- minute incubation on ice, cortex homogenate samples are centrifuged (100,000 G) for 30 minutes at 4°C (Ahmed, N.N., et al., Oncogene, 8,1957 (1983)). The total protein concentration of homogenate is determined using the BCA method (Pierce). GSK-3ß activity in cytosolic homogenate from vehicle- and compound-treated mice is then assayed. The kinase reaction occurs in a 50 µ1 total volume containing 20 mM MOPS pH 7.4, 25 mM ß-glycerol phosphate, 5 mM EGTA, 1 mM NA3VO4, 1 mM DTT, 15 mM MgCl2, 100 µM cold ATP, 200 µM CREB peptide, 10 µL cytosolic cortex brain homogenate, and 5 µCi ?-33P-ATP. The reactions are incubated for thirty minutes at 30°C using a Costar round-96 polypropylene plate. Reactions are then stopped with the addition of 10% H3PO4 and transferred to a Millipore MAPH-NOB 96-well phosphocellulose plate. Next, the reaction is incubated at room temperature for 1.5 hours, filtered and washed with 320 µl 0.75% H3PO4, and filtered and washed with 160 µl H3PO4 at the same concentration using a vacuum manifold. The filter plate is then placed in a carrier plate, and 100µl of Microscint 20 is added to each well. The plate is sealed with sealing tape and incubated overnight at room temperature. The following day, the filter plate is read for 33P on Top Count (Packard). Finally, CPM is normalized to CPM per µg of total protein. The compound of Example 121 was tested in this assay and inhibited kinase activity by 30% at a dose of 20 mg/kg. Beta-Catenin Protection Assay The beta-catenin assay is the fold induction over basal beta-catenin and is performed according to standard protocols (Hedgepeth, CM., Dev. Biol., 185, 82-91 (1997); Chen, G., et al., J. Neurochem., 72,1327-1330 (1999); Hong, M., et al., J. Biol. Chem.. 272, 25326-25332 (1997)). The human familial Alzheimer's disease (FAD) presenilin-1 AG04160C lymphoblast cell line (Coriell Cell Repository, Camden, NJ) is maintained as a suspension culture in RPMI1640 (with L-Glutamine) supplemented with 10% fetal bovine serum and 1% penicillin-streptomycin in an atmosphere of 37°C and 5% CO2. The AG04160C FAD lymphoblast cells are seeded in T-25 cm2 flasks at 2.5 to 5.0 X105 cells/ml in a total volume of 10 ml. Following 16-18 hours of growth, cells are treated with compound at concentrations of 0.1 µM, 1.0 µM, and 10 µM, and are incubated for an additional 24 hours. At the completion of the 24-hour incubation, cells are harvested, washed with PBS, and lysed in freshly prepared lysis buffer (10 mM K2HPO4 pH 7.2, 1 mM EDTA, 5 mM EGTA, 10 mM MgCl2, 50 mM ß-Glycerophosphate, 1 mM Na3VO4, 2 mM DTT, 1 µM Microcystin, 1 mM PMSF, 10 µg/ml leupeptin, 1 µg/ml pepstatin, 1 µg/ml aprotinin, 1% Triton X-100). After a thirty-minute incubation on ice, cells are centrifuged (14,000 rpm) for 30 minutes at 4°C, and resulting supematants are used as whole cell lysates. The total protein concentration in whole cell lysate samples is determined using the BCA method (Pierce). Next, 15 µg of sample is loaded on a 10% Bis-Tris NuPage gel and transferred to a pure nitrocellulose membrane followed by P-catenin immunoblot analysis using a ß- catenin specific antibody (Transduction Labs). The P-catenin accumulation/stability is then quantified following densitometry analysis of protein bands (Kodak Digital Science). Final results are reported as fold induction over basal p-catenin. The compound of Example 121 was tested in this assay and induced a 9.8-fold induction of ß-catenin at 0.1 MM. Bone Deposition Vehicle or test compound in vehicle (1% Carboxymethylcellulose sodium, 0.25% Polysorbate 80, and 0.05% Dow Corning Antifoam 1510-US in purified water) is administered orally by gavage to female Fischer 344 rats daily for 4 days with three rats in each dosage group. The rats are delivered for necropsy and sections of formalin-fixed, paraffin-embedded bone are examined microscopically to evaluate osteoblast proliferation and deposition of osteoid. The compounds in the following tables were tested essentially as described above and hypertrophy and proliferation of osteoblasts along surfaces of medullary trabecula and the cortical periosteum accompanied by production of osteoid was observed. "+" = hypertrophy and proliferation of osteoblasts with production of osteoid observed "-" = hypertrophy and proliferation of osteoblasts with production of osteoid not observed at this dose "Not tested" = compound not tested at this dose The compound of Example 365 was tested again essentially as described above at 0, 3,10, and 30 mg/kg with four rats at each dosage level for 21 days. The vertebra and the femur were submitted for analysis of bone mineral density (BMD), bone mineral content (BMC), and cross sectional area following 21 days of daily dosing with the compound of Example 365. The results from this analysis indicate a significant increase in BMD and BMC relative to control (p<0.05) without a significant change in cross sectional area in both vertebra and femur. Osteoblast proliferation occurred early followed by deposition of new bone by Day 21, but osteoblast proliferation and trabecular hypertrophy were confined to rats given 30 mg/kg of the compound of Example 365 in this study. These data illustrate that short-term exposure to GSK-3 inhibitors stimulates deposition of new and functional bone. Ovariectomized Rat Assay Six-month-old virgin Sprague-Dawley rats are maintained on a 12-hour light, 12- hour dark cycle at 22°C with ad libitum access to food (TD89222 with 0.5% calcium and 0.4% phosphate, Teklad, Madison, WI) and water. Bilateral or sham ovariectomies are performed on the rats and they are allowed to lose bone for 1 month. When the rats are 7 months old, sham and ovariectomized (Ovx) controls (7 animals per group) are orally administered vehicle (1% carboxymethyl cellulose/0.25% Tween 80) and a second group of 7 Ovx animals is orally administered the test compound in vehicle. Dosing is done once a day for 2 months. At the end of 2 months, rats are euthanized using CO2 anesthesia and left femur and vertebra are removed, cleaned of soft tissue and stored in 50% ethanol/saline. Bones are analyzed by QCT as described previously (Sato M., Comparative x-ray densitometry of bones from ovariectomized rats. Bone 17:157S-162S (1995); Sato M., Kim J,, Short L.L., Slemenda C.W, Bryant H.U., Longitudinal and cross- sectional analysis of raloxifene effects on tibiae from ovariectomized aged rats. J Pharmacol Exp Ther 272:1252-1259 (1995)). Ovariectomy reduced vertebral bone mineral density (BMD) by 18 % and femoral midshaft BMD by 5.1%. Oral administration of the compound of Example 252 at 3 mg/kg increased both vertebral BMD and femoral midshaft BMD back to sham control levels (P<0.05 compared to Ovx control). Thus, the compound of Example 252 was active in restoring lost bone both at trabecular and cortical bone sites. Oral administration of the compounds of the present invention is preferred. However, oral administration is not the only route or even the only preferred route. For example, transdermal administration may be very desirable for patients who are forgetful or petulant about taking oral medicine, and the intravenous route may be preferred as a matter of convenience or to avoid potential complications related to oral administration. Compounds of Formula I may also be administered by the percutaneous, intramuscular, intranasal or intrarectal route in particular circumstances. The route of administration may be varied in any way, limited by the physical properties of the drugs, the convenience of the patient and the caregiver, and other relevant circumstances (Remington's Pharmaceutical Sciences, 18th Edition, Mack Publishing Co. (1990)). The pharmaceutical compositions are prepared in a manner well known in the pharmaceutical art. The carrier or excipient may be a solid, semi-solid, or liquid material that can serve as a vehicle or medium for the active ingredient. Suitable carriers or excipients are well known in the art. The pharmaceutical composition may be adapted for oral, inhalation, parenteral, or topical use and may be administered to the patient in the form of tablets, capsules, aerosols, inhalants, suppositories, solutions, suspensions, or the like. The compounds of the present invention may be administered orally, for example, with an inert diluent or capsules or compressed into tablets. For the purpose of oral therapeutic administration, the compounds may be incorporated with excipients and used in the form of tablets, troches, capsules, elixirs, suspensions, syrups, wafers, chewing gums and the like. These preparations should contain at least 4% of the compound of the present invention, the active ingredient, but may be varied depending upon the particular form and may conveniently be between 4% to about 70% of the weight of the unit. The amount of the compound present in compositions is such that a suitable dosage will be obtained. Preferred compositions and preparations of the present invention may be determined by methods well known to the skilled artisan. The tablets, pills, capsules, troches, and the like may also contain one or more of the following adjuvants: binders such as povidone, hydroxypropyl cellulose, microcrystalline cellulose, or gelatin; excipients or diluents such as: starch, lactose, microcrystalline cellulose or dicalcium phosphate, disintegrating agents such as: croscarmellose, crospovidone, sodium starch glycolate, corn starch and the like; lubricants such as: magnesium stearate, steric acid, talc or hydrogenated vegetable oil; glidants such as colloidal silicon dioxide; wetting agents such as: sodium lauryl sulfate and polysorbate SO; and sweetening agents such as: sucrose, aspartame or saccharin may be added or a flavoring agent such as: peppermint, methyl salicylate or orange flavoring. When the dosage unit form is a capsule, it may contain, in addition to materials of the above type, a liquid carrier such as polyethylene glycol or a fatty oil. Other dosage unit forms may contain other various materials that modify the physical form of the dosage unit, for example, as coatings. Thus, tablets or pills may be coated with sugar, hydroxypropyl methylcellulose, polymethacrylates, or other coating agents. Syrups may contain, in addition to the present compounds, sucrose as a sweetening agent and certain preservatives, dyes and colorings and flavors. Materials used in preparing these various compositions should be pharmaceutically pure and non-toxic in the amounts used. The compounds of Formula I are generally effective over a wide dosage range. For example, dosages per day normally fall within the range of about 0.0001 to about 30 mg/kg of body weight. In some instances dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be employed without causing any harmful side effect, and therefore the above dosage range is not intended to limit the scope of the invention in any way. It will be understood that the amount of the compound actually administered will be determined by a physician, in the light of the relevant circumstances, including the condition to be treated, the chosen route of administration, the actual compound or compounds administered, the age, weight, and response of the individual patient, and the severity of the patient's symptoms. We Claim: 3-(9-Fluoro-6-((piperidin-l-yl)carbonyl)-6,7-dihydro-6H-[l,4]diazepino-[6,7,l- hi]indol-l-yl)-4-(imidazo[l,2-a]pyridine-3-yl)-2,5-dioxopyrrole having structure: or a pharmaceutically acceptable salt thereof. 2. 3-(9-Fluoro-6-((piperidin-l-yl)carbonyl)-6,7-dihydro-6H-[l ,4]dia/.epino-[6,7,l - hi]indol-l-yl)-4-(imidazo[l,2-a]pyridine-3-yl)-2,5-dioxopyrrole hydrochloride having structure: 3. A pharmaceutical composition comprising a compound of Claim 1 or 2 in combination with a pharmaceutically acceptable carrier, diluent or excipient. The present invention provides kinase inhibitors of Formula I.

Documents

Application Documents

# Name Date
1 1262-KOLNP-2004-SPECIFICATION.pdf 2011-10-07
2 1262-kolnp-2004-reply to examination report.pdf 2011-10-07
3 1262-kolnp-2004-petition under rule 137.pdf 2011-10-07
4 1262-kolnp-2004-granted-specification.pdf 2011-10-07
5 1262-kolnp-2004-granted-reply to examination report.pdf 2011-10-07
6 1262-kolnp-2004-granted-gpa.pdf 2011-10-07
7 1262-kolnp-2004-granted-form 5.pdf 2011-10-07
8 1262-kolnp-2004-granted-form 3.pdf 2011-10-07
9 1262-kolnp-2004-granted-form 26.pdf 2011-10-07
10 1262-kolnp-2004-granted-form 2.pdf 2011-10-07
11 1262-kolnp-2004-granted-form 18.pdf 2011-10-07
12 1262-kolnp-2004-granted-form 13.pdf 2011-10-07
13 1262-kolnp-2004-granted-form 1.pdf 2011-10-07
14 1262-kolnp-2004-granted-examination report.pdf 2011-10-07
15 1262-kolnp-2004-granted-description (complete).pdf 2011-10-07
16 1262-kolnp-2004-granted-correspondence.pdf 2011-10-07
17 1262-kolnp-2004-granted-claims.pdf 2011-10-07
18 1262-kolnp-2004-granted-assignment.pdf 2011-10-07
19 1262-kolnp-2004-granted-abstract.pdf 2011-10-07
20 1262-kolnp-2004-gpa.pdf 2011-10-07
21 1262-kolnp-2004-form 5.pdf 2011-10-07
22 1262-kolnp-2004-form 3.pdf 2011-10-07
23 1262-KOLNP-2004-FORM 27.pdf 2011-10-07
24 1262-kolnp-2004-form 26.pdf 2011-10-07
25 1262-kolnp-2004-form 2.pdf 2011-10-07
26 1262-kolnp-2004-form 18.pdf 2011-10-07
27 1262-kolnp-2004-form 13.pdf 2011-10-07
28 1262-kolnp-2004-form 1.pdf 2011-10-07
29 1262-KOLNP-2004-FOR ALTERATION OF ENTRY.pdf 2011-10-07
30 1262-kolnp-2004-examination report.pdf 2011-10-07
31 1262-kolnp-2004-description (complete).pdf 2011-10-07
32 1262-kolnp-2004-correspondence.pdf 2011-10-07
33 1262-KOLNP-2004-CORRESPONDENCE 1.1.pdf 2011-10-07
34 1262-kolnp-2004-claims.pdf 2011-10-07
35 1262-kolnp-2004-assignment.pdf 2011-10-07
36 1262-kolnp-2004-abstract.pdf 2011-10-07
37 1262-KOLNP-2004-(27-01-2012)-FORM 27.pdf 2012-01-27
38 1262-KOLNP-2004-(27-01-2012)-CORRESPONDENCE.pdf 2012-01-27
39 1262-KOLNP-2004-(11-03-2013)-FORM-27.pdf 2013-03-11
40 1262-KOLNP-2004-(11-03-2013)-CORRESPONDENCE.pdf 2013-03-11
41 1262-KOLNP-2004-(29-01-2014)-FORM-27.pdf 2014-01-29
42 ipindiaonline.gov.in_epatentfiling_online_frmPreview.asp.pdf 2015-03-13
43 1262-KOLNP-2004-25-01-2023-RELEVANT DOCUMENTS.pdf 2023-01-25
44 1262-KOLNP-2004-01-02-2023-LETTER OF PATENT.pdf 2023-02-01

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