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Novel Modulators Of Calcium Release Activated Calcium Channel

Abstract: Dislcosed are novel calcium release-activated calcium (CRAC) channel inhibitors, methods for preparing them, pharmaceutical compositions containing them, and methods of treatment using them. The present dislcosure also relates to methods for treating non-small cell lung cancer (NSCLC) with CRAC inhibitors, and to methods for identifying therapeutics for treating and of diagnosing cancer.

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Notices, Deadlines & Correspondence

Patent Information

Application #
Filing Date
14 February 2019
Publication Number
37/2019`
Publication Type
INA
Invention Field
PHARMACEUTICALS
Status
Email
prashantb@incozen.com
Parent Application
Patent Number
Legal Status
Grant Date
2020-11-27
Renewal Date

Applicants

Incozen Therapeutics Pvt. Ltd
“Spectrum” Discovery Zone, SP Biotech Park, Phase I, Shameerpet, Hyderabad
Rhizen Pharmaceuticals SA
Fritz Courvoisier 40, 2300 La Chaux de Fonds, SWITZERLAND

Inventors

1. MEYYAPPAN MUTHUPPALANIAPPAN
Incozen Therapeutics Pvt. Ltd., “Spectrum” Discovery Zone, SP Biotech Park, Phase I, Shameerpet, Hyderabad–500 078
2. SRIKANT VISWANADHA
Incozen Therapeutics Pvt. Ltd., “Spectrum” Discovery Zone, SP Biotech Park, Phase I, Shameerpet, Hyderabad–500 078
3. KANTHIKIRAN VS VARANASI
Incozen Therapeutics Pvt. Ltd., “Spectrum” Discovery Zone, SP Biotech Park, Phase I, Shameerpet, Hyderabad–500 078
4. GAYATRI SWAROOP MERIKAPUDI
Incozen Therapeutics Pvt. Ltd., “Spectrum” Discovery Zone, SP Biotech Park, Phase I, Shameerpet, Hyderabad–500 078
5. SWAROOP KUMAR VENKATA SATYA VAKKALANKA
Rhizen Pharmaceuticals SA, Fritz Courvoisier 40, 2300 La Chaux de Fonds

Specification

[01] This application claims the benefit of Indian Provisional Patent Application Nos. 2439/CHE/2009 dated 8th October 2009; 2636/CHE/2009 dated 30th October 2010; 158/CHE/2010 dated 25th January 2010; 1513/CHE/2009 dated 2nd June 2010; 1514/CHE/2010 dated 2nd June 2010; and 2385/CHE/2010 dated 19th August, 2010, each of which is hereby incorporated by reference.
FIELD OF THE INVENTION
[02] The present invention relates to calcium release-activated calcium
(CRAC) channel inhibitors of formula I and pharmaceutically acceptable salts thereof, methods for preparing them, pharmaceutical compositions containing them, and methods of treatment with them.
[03] The present invention also relates to methods for treating non-small
cell lung cancer (NSCLC) with CRAC inhibitors, and methods for identifying therapeutics for treating and of diagnosing cancer.
BACKGROUND OF THE INVENTION
[04] The regulation of intracellular calcium is a key element in the
transduction of signals into and within cells. Cellular responses to growth factors, neurotransmitters, hormones and a variety of other signal molecules are initiated through calcium-dependent processes. The importance of calcium ion as a second messenger is emphasised by many different mechanisms which work together to maintain calcium homeostasis. Changes in intracellular free calcium ion concentration represent the most wide-spread and important signalling event for regulating a plethora of cellular responses. A widespread route for calcium ion entry into the cell is through store-operated channels (SOCs), i.e. many cell types employ store-operated calcium ion entry as their principal pathway for calcium ion influx. This mechanism is engaged following calcium ion release from stores, where the depleted stores lead to activation of calcium release-activated calcium (CRAC) channels.
[05] CRAC channels, a subfamily of store-operated channels, are activated
by the release of calcium from intracellular stores, particularly from the

endoplasmic reticulum (ER). These channels are key factors in the regulation of a wide range of cellular function, including muscle contraction, protein and fluid secretion and control over cell growth and proliferation and hence play an essential role in various diseases such as immune disorders and allergic responses. Among several biophysically distinct store-operated currents the best characterized and most calcium ion selective one is the CRAC current. Thus, CRAC channels mediate essential functions from secretion to gene expression and cell growth and form a network essential for the activation of immune cells that establish the adaptive immune response. Recently two proteins, stromal interaction molecule (STIM1) and CRAC Modulator 1 (CRACM1 or Orai1), have been identified as the essential components that fully reconstitute and amplify CRAC currents in heterologous expression systems with a similar biophysical fingerprint. In mammals, there exist several homologs of these proteins: STIM1 and STIM2 in the endoplasmic reticulum and CRACM1, CRACM2, and CRACM3 in the plasma membrane.
[06] CRAC currents were initially discovered in lymphocytes and mast
cells, and at the same time have been characterized in various cell lines such as S2 drosophila, DT40 B cells, hepatocytes, dendritic, megakaryotic, and Madin– Darby canine kidney cells. In lymphocytes and in mast cells, activation through antigen or Fc receptors initiates the release of calcium ion from intracellular stores caused by the second messenger inositol (1,4,5)-triphosphate (Ins(1,4,5)P3), which in turn leads to calcium ion influx through CRAC channels in the plasma membrane. Store-operated Ca2+ currents characterized in smooth muscle, A431 epidermal cells, endothelial cells from various tissues, and prostate cancer cell lines show altered biophysical characteristics suggesting a distinct molecular origin.
[07] For example, calcium ion influx across the cell membrane is important
in lymphocyte activation and adaptive immune responses. [Ca2+]-oscillations triggered through stimulation of the TCR (T-cell antigen receptor) have been demonstrated to be prominent, and appear to involve only a single calcium ion influx pathway, the store-operated CRAC channel. See, e.g., Lewis "Calcium signalling mechanisms in T lymphocytes," Annu. Rev. Immunol. 19, (2001), 497-521; Feske et al. "Ca++ calcineurin signalling in cells of the immune system," Biochem. Biophys. Res. Commun. 311, (2003), 1117-1132; Hogan et al.

"Transcriptional regulation by calcium, calcineurin, and NFAT," Genes Dev. 17, (2003) 2205—2232.
[08] It is well established now that intracellular calcium plays an important
role in various cellular functions, and that its concentration is regulated by calcium ion influx through calcium channels on the cell membrane. Calcium ion channels, which are located in the nervous, endocrine, cardiovascular, and skeletal systems and are modulated by membrane potential, are called voltage-operated Ca2+ (VOC) channels. These channels are classified into L, N, P, Q, R, and T subtypes. Excessive Ca2+ influx through the VOC channels causes hypertension and brain dysfunction. In contrast, calcium ion channels on inflammatory cells, including lymphocytes, mast cells, and neutrophils, can be activated regardless of their membrane potential. This type of calcium ion channel has been reported to act in the crisis and exacerbation of inflammation and autoimmune diseases. In the T cells, it has been reported that the early stages of activation consist of pre- and post-Ca2+ events. The stimulation of T cell receptors induces pre-Ca2+ events, including the generation of IP3, followed by the release of Ca2+ from the endoplasmic reticulum (ER). In post-Ca2+ events, depletion of Ca2+ in the ER induces the activation of CRAC channels, and capacitative Ca2+ influx through the CRAC channel sustains high intracellular Ca2+ concentration ([Ca2+]i). This prolonged high [Ca2+]i activates cytosolic signal transduction to produce lipid mediators (e.g., LTD4), cytokines [e.g., interleukin-2 (IL-2)], and matrix metalloproteinases, which participate in the pathogenesis of inflammation and autoimmune diseases.
[09] These facts suggest that CRAC channel modulators can be useful for
the treatment of diseases caused by the activation of inflammatory cells without side effects observed in steroids. Since VOC channel modulators would cause adverse events in the nervous and cardiovascular systems, it may be necessary for CRAC channel modulators to exhibit sufficient selectivity over VOC channels if they are to be used as anti-inflammatory drugs.
[10] Accordingly, CRAC channel modulators have been said to be useful in
treatment, prevention and/or amelioration of diseases or disorders associated with calcium release-activated calcium channel including, but not limited to, inflammation, glomerulonephritis, uveitis, hepatic diseases or disorders, renal diseases or disorders, chronic obstructive pulmonary disease, rheumatoid

arthritis, inflammatory bowel disease, vasculitis, dermatitis, osteoarthritis,
inflammatory muscle disease, allergic rhinitis, vaginitis, interstitial cystitis,
scleroderma, osteoporosis, eczema, allogeneic or xenogeneic transplantation,
graft rejection, graft-versus-host disease, lupus erythematosus, type I diabetes,
pulmonary fibrosis, dermatomyositis, thyroiditis, myasthenia gravis, autoimmune
hemolytic anemia, cystic fibrosis, chronic relapsing hepatitis, primary biliary
cirrhosis, allergic conjunctivitis, hepatitis and atopic dermatitis, asthma, Sjogren's
syndrome, cancer and other proliferative diseases, and autoimmune diseases or
disorders. See, e.g., International Publication Nos. WO 2005/009954 , WO
2005/009539, WO 2005/009954, WO 2006/034402, WO 2006/081389, WO
2006/081391, WO 2007/087429, WO 2007/087427, WO 2007087441, WO
200/7087442, WO 2007/087443, WO 2007/089904, WO 2007109362, WO
2007/112093, WO 2008/039520, WO 2008/063504, WO 2008/103310, WO
2009/017818, WO 2009/017819, WO 2009/017831, WO 2010/039238, WO
2010/039237, WO 2010/039236, WO 2009/089305 and WO 2009/038775, and
US Publication Nos.: US 2006/0173006 and US 2007/0249051.
[11] CRAC channel inhibitors which have been identified include SK&F
96365 (1), Econazole (2) and L-651582 (3).
[12] However, these molecules lack sufficient potency and selectivity over
VOC channels and hence are not suitable for therapeutic use.
[13] Recent publications by Taiji et al. (European Journal of
Pharmacology, 560, 225-233, 2007) and Yasurio Yonetoky et al. (Bio. & Med. Chem., 16, 9457-9466, 2008) describe a selective CRAC channel inhibitor coded YM-58483 that is capable of inhibiting T cell function and proposed to be of some benefit in the treatment of inflammatory diseases including bronchial asthma.

[14] Yasurio Yonetoky et al. disclose YM-58483 to be selective for CRAC
channels over the voltage operated channels (VOC) with a selective index of 31.
[15] Other CRAC channel modulators disclosed include various biaryl
and/or heterocyclic carboxanilide compounds including for example PCT or US patent applications assigned to Synta Pharmaceuticals viz. WO 2005/009954 , WO 2005/009539, WO 2005/009954, WO 2006/034402, WO 2006/081389, WO 2006/081391, WO 2007/087429, WO 2007/087427, WO 2007087441, WO 200/7087442, WO 2007/087443, WO 2007/089904, WO 2007109362, WO 2007/112093, WO 2008/039520, WO 2008/063504, WO 2008/103310, WO 2009/017818, WO 2009/017819, WO 2009/017831, WO 2010/039238, WO 2010/039237, WO 2010/039236, WO 2009/089305 and WO 2009/038775, US 2006/0173006 and US 2007/0249051.
[16] Other patent publications relating to CRAC channel modulators
include applications by Astellas, Queens Medical Centre, Calcimedica and others viz., WO 2007 /121186, WO 2006/0502 14, WO 2007/139926, WO 2008/148108, US 7,452,675, US 2009/023177, WO 2007/139926, US 6,696,267 , US 6,348,480 , WO 2008/106731, US 2008/0293092, WO 2010/048559, WO 2010/027875, WO2010/025295, WO 2010/034011, WO2010/034003, WO 2009/076454, WO 2009/035818, US 2010/0152241, US 2010/0087415, US 2009/0311720 and WO 2004/078995.
[17] Further review and literature disclosure in the area of CRAC channels
includes Isabella Derler et al., Expert Opinion in Drug Discovery, 3(7), 787-800, 2008; Yousang G et al., Cell Calcium, 42, 145-156, 2007; Yasurio Yonetoky et.al., Bio. & Med. Chem., 14, 4750-4760, 2006; and Yasurio Yonetoky et.al., Bio. & Med. Chem., 14, 5370-5383, 2006. All of these patents and/or patent applications and literature disclosures are incorporated herein by reference in their entirety for all purposes.

[18] Cancer is a major public health problem in India, the U.S. and many
other parts of the world. Currently, 1 in 4 deaths in India is due to cancer. Lung cancer is the leading cause of cancer deaths worldwide because of its high incidence and mortality, with 5-year survival estimates of ~10% for non-small cell lung cancer (NSCLC). It has been reported that further investigations on the mechanisms of tumorigenesis and chemoresistance of lung cancer are needed to improve the survival rate (Jemal A, et al., Cancer Statistics, CA Cancer. J. Clin., 56, 106–130, 2006). There are four major types of NSCLC, namely, adenocarcinoma, squamous cell carcinoma, bronchoalveolar carcinoma, and large cell carcinoma. Adenocarcinoma and squamous cell carcinoma are the most common types of NSCLC based on cellular morphology (Travis et al., Lung Cancer Principles and Practice, Lippincott-Raven, New York, 361-395, 1996). Adenocarcinomas are characterized by a more peripheral location in the lung and often have a mutation in the K-ras oncogene (Gazdar et al., Anticancer Res., 14, 261-267, 1994). Squamous cell carcinomas are typically more centrally located and frequently carry p53 gene mutations (Niklinska et al., Folia Histochem. Cytobiol., 39, 147-148, 2001).
[19] The majority of NSCLCs are characterized by the presence of the ras
mutation thereby rendering the patient relatively insensitive to treatment by
known kinase inhibitors. As a result, current treatments of lung cancer are
generally limited to cytotoxic drugs, surgery, and radiation therapy. There is a
need for treatments which have fewer side effects and more specifically target the
cancer cells, are less invasive, and improve the prognosis of patients.
[20] The identification of lung tumor-initiating cells and associated markers
may be useful for optimization of therapeutic approaches and for predictive and prognostic information in lung cancer patients. Accordingly, a need remains for new methods of predicting, evaluating and treating patients afflicted with lung cancer.
[21] There still remains an unmet and dire need for small molecule
modulators having specificity towards Stim1 and/or Orai1 in order to regulate and/or modulate activity of CRAC channels, particularly for the treatment of diseases and disorders associated with the CRAC.

SUMMARY OF THE INVENTION
[22] The present invention relates to compounds of formula (I), methods for
their preparation, pharmaceutical compositions containing them, and methods of
treatment with them.
[23] In particular, compounds of formula (I) and their pharmaceutically
acceptable salts thereof are calcium release-activated calcium channel modulators
useful in the treatment, prevention, inhibition and/or amelioration of diseases or
disorders associated with calcium release-activated calcium channel.
[24] In one aspect, the present invention relates to a compound of formula
(I):
i v
or a tautomer thereof, prodrug thereof, N-oxide thereof, pharmaceutically acceptable
ester thereof or pharmaceutically acceptable salt thereof,
wherein
Ring Hy represents
Ring Hy is optionally substituted with R’’’;
R1 and R2 are the same or different and are independently selected from CH3, CH2F, CHF2, CF3, substituted or unsubstituted C(3-5) cycloalkyl, CH2-ORa, CH2-NRaRb, CN and COOH with the proviso that:
a) both R1 and R2 at the same time do not represent CF3 ,
b) both R1 and R2 at the same time do not represent CH3,
c) when R1 is CF3 then R2 is not CH3 and
d) when R1 is CH3 then R2 is not CF3; Ring Ar represents:

T, U, V and W are the same or different and are independently selected from CRa and N;
Z , Z and Z are the same or different and are independently selected from CRa, CRaR , O, S and -NRa, with the proviso that at least one of Z , Z and Z represents O, S or -NRa;
L1 and L2 together represent -NH-C(=X)-, -NH-S(=O)q-, -C(=X)NH- , -NH-CR’R or - S(=O)qNH-;
A is absent or selected from -(CR’R )-, O, S(=O)q, C(=X) and -NRa;
each occurrence of R’ and R are the same or different and are independently selected from hydrogen, hydroxy, cyano, halogen, -ORa, -COORa, -S(=O)q-Ra, -NRaR , -C(=X)-Ra, substituted or unsubstituted C(1-6) alkyl group, substituted or unsubstituted C(1-6) alkenyl, substituted or unsubstituted C(1-6) alkynyl, and substituted or unsubstituted C(3-5)cycloalkyl, or R’ and R , when directly bound to a common atom, may be joined to form a substituted or unsubstituted saturated or unsaturated 3-6 member ring, which may optionally include one or more heteroatoms which may be same or different and are selected from O, NRa and S;
R’’’ is selected from hydrogen, hydroxy, cyano, halogen, -ORa, -COORa, -S(=O)q-Ra, -NRaR, -C(=X)-Ra, substituted or unsubstituted C(1-6) alkyl group, substituted or unsubstituted C(1-6) alkenyl, substituted or unsubstituted C(1-6) alkynyl, and substituted or unsubstituted C(3-5)cycloalkyl;
each occurrence of X is independently selected from O, S and -NRa;
Cy is selected from substituted or unsubstituted cycloalkyl group, substituted or unsubstituted heterocyclyl, substituted or unsubstituted aryl, and substituted or unsubstituted heteroaryl;
each occurrence of Ra and R are the same or different and are independently selected from hydrogen, nitro, hydroxy, cyano, halogen, -ORc, -S(=O)q-Rc, -NRcR , -C(=Y)-Rc, -CRcR -C(=Y)-Rc, -CRcR -Y-CRcR -,-C(=Y)-NRcR -, -NRR -C(=Y)-NRcR -, -S(=O)q-NRcR -, -NRcR -S(=O)q-NRcR -, -NRcR -NRcR -, substituted or unsubstituted alkyl, substituted or unsubstituted alkenyl, substituted or unsubstituted alkynyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted

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1 201942005856-STATEMENT OF UNDERTAKING (FORM 3) [14-02-2019(online)].pdf 2019-02-14
1 201942005856-US(14)-HearingNotice-(HearingDate-30-09-2020).pdf 2021-10-17
2 201942005856-FORM 1 [14-02-2019(online)].pdf 2019-02-14
2 201942005856-FORM-26 [21-06-2021(online)].pdf 2021-06-21
3 201942005856-IntimationOfGrant27-11-2020.pdf 2020-11-27
3 201942005856-FIGURE OF ABSTRACT [14-02-2019(online)].pdf 2019-02-14
4 201942005856-PatentCertificate27-11-2020.pdf 2020-11-27
4 201942005856-DRAWINGS [14-02-2019(online)].pdf 2019-02-14
5 201942005856-Written submissions and relevant documents [14-10-2020(online)].pdf 2020-10-14
5 201942005856-DECLARATION OF INVENTORSHIP (FORM 5) [14-02-2019(online)].pdf 2019-02-14
6 201942005856-FORM 13 [25-09-2020(online)].pdf 2020-09-25
6 201942005856-COMPLETE SPECIFICATION [14-02-2019(online)].pdf 2019-02-14
7 Form-18_Normal Request_28-06-2019.pdf 2019-06-28
7 201942005856-RELEVANT DOCUMENTS [25-09-2020(online)].pdf 2020-09-25
8 Correpondence by Applicant_Form-18_28-06-2019.pdf 2019-06-28
8 201942005856-Submission of Document_17-08-2020.pdf 2020-08-17
9 201942005856-ABSTRACT [28-07-2020(online)].pdf 2020-07-28
9 201942005856-FER.pdf 2020-01-29
10 201942005856-CLAIMS [28-07-2020(online)].pdf 2020-07-28
10 201942005856-PETITION UNDER RULE 137 [28-07-2020(online)].pdf 2020-07-28
11 201942005856-DRAWING [28-07-2020(online)].pdf 2020-07-28
11 201942005856-OTHERS [28-07-2020(online)].pdf 2020-07-28
12 201942005856-FER_SER_REPLY [28-07-2020(online)].pdf 2020-07-28
12 201942005856-OTHERS [28-07-2020(online)]-1.pdf 2020-07-28
13 201942005856-FER_SER_REPLY [28-07-2020(online)].pdf 2020-07-28
13 201942005856-OTHERS [28-07-2020(online)]-1.pdf 2020-07-28
14 201942005856-DRAWING [28-07-2020(online)].pdf 2020-07-28
14 201942005856-OTHERS [28-07-2020(online)].pdf 2020-07-28
15 201942005856-CLAIMS [28-07-2020(online)].pdf 2020-07-28
15 201942005856-PETITION UNDER RULE 137 [28-07-2020(online)].pdf 2020-07-28
16 201942005856-ABSTRACT [28-07-2020(online)].pdf 2020-07-28
16 201942005856-FER.pdf 2020-01-29
17 Correpondence by Applicant_Form-18_28-06-2019.pdf 2019-06-28
17 201942005856-Submission of Document_17-08-2020.pdf 2020-08-17
18 Form-18_Normal Request_28-06-2019.pdf 2019-06-28
18 201942005856-RELEVANT DOCUMENTS [25-09-2020(online)].pdf 2020-09-25
19 201942005856-FORM 13 [25-09-2020(online)].pdf 2020-09-25
19 201942005856-COMPLETE SPECIFICATION [14-02-2019(online)].pdf 2019-02-14
20 201942005856-Written submissions and relevant documents [14-10-2020(online)].pdf 2020-10-14
20 201942005856-DECLARATION OF INVENTORSHIP (FORM 5) [14-02-2019(online)].pdf 2019-02-14
21 201942005856-PatentCertificate27-11-2020.pdf 2020-11-27
21 201942005856-DRAWINGS [14-02-2019(online)].pdf 2019-02-14
22 201942005856-IntimationOfGrant27-11-2020.pdf 2020-11-27
22 201942005856-FIGURE OF ABSTRACT [14-02-2019(online)].pdf 2019-02-14
23 201942005856-FORM-26 [21-06-2021(online)].pdf 2021-06-21
23 201942005856-FORM 1 [14-02-2019(online)].pdf 2019-02-14
24 201942005856-US(14)-HearingNotice-(HearingDate-30-09-2020).pdf 2021-10-17
24 201942005856-STATEMENT OF UNDERTAKING (FORM 3) [14-02-2019(online)].pdf 2019-02-14

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