Abstract: ABSTRACT ARTIFICIAL INTELLIGENCE-BASED SYSTEM FOR GENERATING POCKET-CONDITIONED MOLECULES AND METHOD THEREOF The present invention discloses an artificial intelligence-based (AI-based) system for generating pocket-conditioned molecules and an artificial intelligence-based (AI-based) method thereof. The AI-based system (102) obtains ligand data and protein pocket data for generating molecular interactions. The AI-based system (102) aligns two-dimensional (2D) molecular representations with three-dimensional (3D) molecular conformations and two-dimensional (2D) sequences with three-dimensional (3D) coordinates to ensure a spatial consistency and a structural consistency. The AI-based system (102) encodes the ligand data and the protein pocket data to generate topological features and spatial features. The AI-based system (102) determines interaction between molecular structures based on incorporating positional embeddings to the encoded ligand data and protein pocket data. The AI-based system (102) generates
Description:FIELD OF INVENTION
[0001]Embodiments of the present invention relate to computational drug discovery and more particularly relate to an artificial intelligence-based (AI-based) system for generating one or more pocket-conditioned molecules and an artificial intelligence-based (AI-based) method thereof.
BACKGROUND
[0002]Field of drug discovery relies heavily on identification of small one or more molecular structures that may effectively bind to specific protein targets. Traditional drug development methods involve extensive laboratory testing and computational docking simulations, both of which require significant time and resources. Advances in artificial intelligence (AI) and machine learning (ML) have enabled the use of one or more predictive models to accelerate this process, allowing researchers to screen vast molecular libraries for potential one or more pocket-conditioned molecules. AI-driven molecular modelling techniques have demonstrated promise in identifying the one or more pocket-conditioned m , Claims:I/ We Claim:
1. An artificial intelligence-based (AI-based) method (300) for generating one or more pocket-conditioned molecules, comprising:
obtaining (302), by one or more hardware processors (106) through a data obtaining subsystem (206), at least one of: ligand data comprises at least one of: two-dimensional (2D) molecular representations and three-dimensional (3D) molecular conformations and protein pocket data comprises at least one of: two-dimensional (2D) sequences and three-dimensional (3D) coordinates to generate molecular interactions;
aligning (304), by the one or more hardware processors (106) through a data pre-processing subsystem (208), at least one of: the two-dimensional (2D) molecular representations with the three-dimensional (3D) molecular conformations and the two-dimensional (2D) sequences with the three-dimensional (3D) coordinates to verify at least one of: a spatial consistency and a structural consistency;
encoding (306), by the one or more hardware processors (106) through a data
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| 1 | 202541028438-STATEMENT OF UNDERTAKING (FORM 3) [26-03-2025(online)].pdf | 2025-03-26 |
| 2 | 202541028438-POWER OF AUTHORITY [26-03-2025(online)].pdf | 2025-03-26 |
| 3 | 202541028438-MSME CERTIFICATE [26-03-2025(online)].pdf | 2025-03-26 |
| 4 | 202541028438-FORM28 [26-03-2025(online)].pdf | 2025-03-26 |
| 5 | 202541028438-FORM-9 [26-03-2025(online)].pdf | 2025-03-26 |
| 6 | 202541028438-FORM FOR SMALL ENTITY(FORM-28) [26-03-2025(online)].pdf | 2025-03-26 |
| 7 | 202541028438-FORM FOR SMALL ENTITY [26-03-2025(online)].pdf | 2025-03-26 |
| 8 | 202541028438-FORM 18A [26-03-2025(online)].pdf | 2025-03-26 |
| 9 | 202541028438-FORM 1 [26-03-2025(online)].pdf | 2025-03-26 |
| 10 | 202541028438-EVIDENCE FOR REGISTRATION UNDER SSI(FORM-28) [26-03-2025(online)].pdf | 2025-03-26 |
| 11 | 202541028438-EVIDENCE FOR REGISTRATION UNDER SSI [26-03-2025(online)].pdf | 2025-03-26 |
| 12 | 202541028438-DRAWINGS [26-03-2025(online)].pdf | 2025-03-26 |
| 13 | 202541028438-DECLARATION OF INVENTORSHIP (FORM 5) [26-03-2025(online)].pdf | 2025-03-26 |
| 14 | 202541028438-COMPLETE SPECIFICATION [26-03-2025(online)].pdf | 2025-03-26 |
| 15 | 202541028438-Proof of Right [27-03-2025(online)].pdf | 2025-03-27 |
| 16 | 202541028438-Power of Attorney [10-06-2025(online)].pdf | 2025-06-10 |
| 17 | 202541028438-FORM28 [10-06-2025(online)].pdf | 2025-06-10 |
| 18 | 202541028438-Form 1 (Submitted on date of filing) [10-06-2025(online)].pdf | 2025-06-10 |
| 19 | 202541028438-Covering Letter [10-06-2025(online)].pdf | 2025-06-10 |
| 20 | 202541028438-CERTIFIED COPIES TRANSMISSION TO IB [10-06-2025(online)].pdf | 2025-06-10 |
| 21 | 202541028438-FER.pdf | 2025-10-28 |
| 22 | 202541028438-FORM 3 [29-10-2025(online)].pdf | 2025-10-29 |
| 1 | 202541028438_SearchStrategyNew_E_SearchHistoryE_27-10-2025.pdf |